diff --git a/tools/cooja/config/external_tools_linux.config b/tools/cooja/config/external_tools_linux.config
index 435b3c5d3..0bc3b521e 100644
--- a/tools/cooja/config/external_tools_linux.config
+++ b/tools/cooja/config/external_tools_linux.config
@@ -17,7 +17,7 @@ REGEXP_PARSE_SENSORS = ([^/]*.c):SENSORS_SENSOR\\(([^,]*),
 LINKER_ARGS_1 =
 LINKER_ARGS_2 =
 COMPILER_ARGS =
-CONTIKI_STANDARD_PROCESSES = sensors_process;etimer_process;cfs_cooja_process
+CONTIKI_STANDARD_PROCESSES = sensors_process;etimer_process
 CONTIKI_MAIN_TEMPLATE_FILENAME = contiki_template.c
 MANTIS_MAIN_TEMPLATE_FILENAME = mantis_template.c
 CORECOMM_TEMPLATE_FILENAME = corecomm_template.java
diff --git a/tools/cooja/config/external_tools_win32.config b/tools/cooja/config/external_tools_win32.config
index 25c7a86c5..06f69eee0 100644
--- a/tools/cooja/config/external_tools_win32.config
+++ b/tools/cooja/config/external_tools_win32.config
@@ -17,7 +17,7 @@ REGEXP_PARSE_SENSORS = ([^/]*.c):SENSORS_SENSOR\\(([^,]*),
 LINKER_ARGS_1 = --add-stdcall-alias /usr/lib/mingw/dllcrt2.o
 LINKER_ARGS_2 = -L/usr/lib/mingw -lmingw32 -lmingwex -lmsvcrt
 COMPILER_ARGS = -mno-cygwin -I'C:/Program Files/Java/jdk1.5.0_06/include' -I'C:/Program Files/Java/jdk1.5.0_06/include/win32'
-CONTIKI_STANDARD_PROCESSES = sensors_process;etimer_process;cfs_cooja_process
+CONTIKI_STANDARD_PROCESSES = sensors_process;etimer_process
 CONTIKI_MAIN_TEMPLATE_FILENAME = contiki_template.c
 MANTIS_MAIN_TEMPLATE_FILENAME = mantis_template.c
 CORECOMM_TEMPLATE_FILENAME = corecomm_template.java